Using a new experimental test structure, biophysicists at JILA have unraveled（解开，阐明） part of a 15-year mystery in the mechanics of DNA¹—just how the molecule² manages to suddenly extend to almost twice its normal length. The new test structure should support research on DNA elasticity³（弹性，弹力） as a standard for tiny forces and help refine studies of how drugs and other substances bind⁴ to DNA. In a new paper in the Journal of the American Chemical Society, JILA scientists disprove a leading explanation for DNA overstretching, a curious behavior in which the molecule's double helix（螺旋） structure suddenly extends by 70 percent when subjected to 65 picoNewtons (pN) of force. The exact steps of the process have been controversial since overstretching was discovered in 1996. Contrary to a popular theory, the new JILA work shows that DNA's backbone⁵ does not need to have a small gap, often called a nick, or sport loose ends for the dramatic extension to occur at 65 pN.

JILA is a joint⁶ institute of the National Institute of Standards and Technology (NIST) and the University of Colorado at Boulder⁷.

"Overstretching is a really amazing phenomenon, and even after 15 years, people are still debating it," says senior author Tom Perkins, a NIST expert in the mechanics of single molecules⁸. "DNA stretches and stretches like a rubber band and you think it's going to break, and then all of a sudden it nearly doubles in length. Something wonderfully interesting happens at this transition."

The leading theory is that overstretching introduces so much energy that the DNA melts, with a single strand⁹ peeling off（剥离） from nicks in the backbone or free ends. This model assumes that nicks or ends are essential. Scientists did not test this assumption until now because there was no platform for restraining the ends without also locking the molecule's structure and rotation¹⁰.

The JILA team's key advance was a clever geometry that binds¹¹ a looped end of DNA to a micro-sized bead¹², while the other end of the DNA has both strands¹³ stapled¹⁴ to a surface. Lasers apply force to the bead and measure its position. The DNA has freedom to rotate but, crucially, no loose ends.

The researchers compared one piece of DNA without nicks or free ends to another piece of DNA they had nicked. They found that both molecules overstretched at essentially¹⁵ the same force, indicating the same mechanism¹⁶ is at work in both cases.

In addition to narrowing the focus of debate about overstretched DNA, Perkins says the findings and the new DNA test structure will support NIST efforts to develop an official picoNewton-scale force standard that is traceable to the International System of Units. A picoNewton is one-trillionth of a newton, the unit of force; one newton is roughly the weight of a small apple. DNA is already used informally as a calibration standard for atomic force microscopes. Further JILA studies are planned.